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Sub-publications- Adams, M., Raadik, T.A., Burridge, C.P. & Georges, A. 2014. Global biodiversity assessment and hyper-cryptic species complexes: more than one species of elephant in the room. Systematic Biology 63(4): 518–533
- Adl, S.M., Leander, B.S., Simpson, A.G.B., Archibald, J.M., Anderson, O.R., Bass, D., Bowser, S.S., Brugerolle, G., Farmer, M.A., Karpov, S., Kolisko, M., Lane, C.E., Lodge, D.J., Mann, D.G., Meisterfeld, R., Mendoza, L., Moestrup, Ø., Mozley-Standridge, S.E., Smirnov, A.V. & Spiegel, F. 2007. Diversity, nomenclature, and taxonomy of protists. Systematic Biology 56: 684-689
- Belshaw, R. & Quicke, D.L.J. 2002. Robustness of ancestral state estimates: evolution of life history strategy in ichneumonoid parasitoids. Systematic Biology 51(3): 450-477
- Brennan, I., Lemmon, A.R., Lemmon, E.M., Portik, D.M., Weijola, W., Welton, L., Donnellan, S.C. & Keogh, J.S. 2021. Phylogenomics of Monitor lizards and the role of competition in dictating body size disparity. Systematic Biology 70(1): 120-132
- Burridge, C.P., Meléndez, R. & Dyer, B.S. 2006. Multiple origins of the Juan Fernández kelpfish fauna and evidence for frequent and unidirectional dispersal of Cirrhitoid fishes across the South Pacific. Systematic Biology 55(4): 566-578
- Chombard, C., Boury-Esnault, N. & Tillier, S. 1998. Reassessment of homology of morphological characters in Tetractinellid sponges based on molecular data. Systematic Biology 47(3): 351-366
- Cognato, A.I. & Vogler, A.P. 2001. Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae). Systematic Biology 50(6): 758-780
- Collin, R. 2003. Phylogenetic relationships among Calyptraeid gastropods and their implications for the biogeography of marine speciation. Systematic Biology 52(5): 618-640
- Crandall, K.A. & Fitzpatrick, J.F. Jr 1996. Crayfish molecular systematics: using a combination of procedures to estimate phylogeny. Systematic Biology 45(1): 1-26
- Dohrmann, M., Janussen, D. , Reitner, J., Collins, A. G. & Wörheide, G. 2008. Phylogeny and evolution of glass sponges (Porifera, Hexactinellida). Systematic Biology 57: 388-405
- Eernisse, D., Albert, J.S. & Anderson, F.E. 1992. Annelida and Arthropoda are not sister taxa: a phylogenetic analysis of spiralian metazoan morphology. Systematic Biology 41: 305-330
- Esquerré, D., Donnellan, S., Brennan, I.G., Lemmon, A.R., Lemmon, E.M., Zaher, H., Grazziotin, F.G. & Keogh, S.J. 2020. Phylogenomics, biogeography, and morphometrics reveal rapid phenotypic evolution in pythons after crossing Wallace’s Line. Systematic Biology 69(6): 1039-1051
- Flook, P.K., Klee, S. & Rowell, C.H.F. 1999. Combined molecular analysis of the Orthoptera (Arrthropoda, Insecta) and implications for their higher systematics. Systematic Biology 48: 233-253
- Freitas, A.V.L. & Brown, K.S.J. 2004. Phylogeny of the Nymphalidae (Lepidoptera). Systematic Biology 53: 363–383
- Jennings, W.B., Pianka, E.R. & Donnellan, S. 2003. Systematics of the lizard family Pygopodidae with implications for the diversification of Australian temperate biotas. Systematic Biology 16 52(757-780)
- Jondelius, U., Wallberg, A., Hooge, M. and Raikova, O.I. 2011. How the worm got its pharynx: phylogeny, classification and Bayesian assessment of character evolution in Acoela. Systematic Biology 60(6): 845-871
- Kjer, K.M., Blahnik, R.J. & Holzenthal, R.W. 2001. Phylogeny of Trichoptera (caddisflies): characterisation of signal and noise within multiple datasets. Systematic Biology 50(6): 781-816
- Kuntner, M., Hamilton, C.A., Cheng R.-C., Gregorič, M., Lupše, N., Lokovšek, T., Lemmon, E.M., Lemmon, A.R., Agnarrson, I., Coddington, J.A. & Bond, J.E. 2019. Golden Orbweavers ignore biological rules: phylogenomic and comparative analyses unravel a complex evolution of sexual size dimorphism. Systematic Biology 68(4): 555-572
- Lanterbecq D, Rouse GW, Milinkovitch MC, Eeckhaut I. 2006. Molecular phylogenetic analyses indicate multiple independent emergences of parasitism in Myzostomida (Spiralia). Systematic Biology 55: 208-227
- Li, C., Lu, G. & Orti, G. 2008. Optimal data partitioning and a test case for ray-finned fishes (Actinopterygii) based on ten nuclear loci. Systematic Biology 57: 519–539
- McCracken, K.G., Harshman, J., McClellan, D.A. &Afton, A.D. 1999. Data set incongruence and correlated character evolution: an example of functional convergence in the hind-limbs of Stifftail Diving Ducks. Systematic Biology 48(4): 693-714
- Mindell, D.P. 1992. Review of 'Sibley, D.G. & Ahlquist, J.E. Phylogeny and Classification of Birds. A Study in Molecular Evolution 1990'. Systematic Biology 41: 126-134
- Opatova, V., Hamilton, C.A., Hedin, M., Montes de Oca, L., Král, J. & Bond, J.E. 2020. Phylogenetic systematics and evolution of the spider infraorder Mygalomorphae using genomic scale data. Systematic Biology 69(4): 671-707
- Rüber, L., Britz, R. & Zardoya, R. 2006. Molecular phylogenetics and evolutionary diversification of labyrinth fishes (Perciformes: Anabantoidei). Systematic Biology 55(3): 374–397
- Schwarz, M.P., Fuller, S., Tierney, S.M. & Cooper, S.J.B. 2006. Molecular phylogenetics of the Exoneurine Allodapine bees reveal an ancient and puzzling dispersal from Africa to Australia. Systematic Biology 55(1): 31-45