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Sub-publications- Natusch, D.J.D., Esquerré, D., Lyons, J.A., Hamidy, A., Lemmon, A.R. Lemmon, E.M., Riyanto, A., Keogh, S.J. & Donnellan, S. 2020. Species delimitation and systematics of the green pythons (Morelia viridis complex) of melanesia and Australia. Molecular Phylogenetics and Evolution 142: online version
- Nazari, V., Zakharov, E. & Sperling, F.A.H. 2007. Phylogeny, historical biogeography, and taxonomic ranking of Parnassinae (Lepidoptera, Papilionidae) based on morphology and seven genes. Molecular Phylogenetics and Evolution 42: 131–156
- Near, T.J., Pesavento, J.J. & Cheng, C.-H.C. 2003. Mitochondrial DNA, morphology, and the phylogenetic relationships of Antarctic icefishes (Notothenioidei: Channichthyidae). Molecular Phylogenetics and Evolution 28(2003): 87-98
- Near, T.J., Pesavento, J.J. & Cheng, C-H.C. 2004. Phylogenetic investigations of Antarctic notothenioid fishes (Perciformes: Notothenioidei) using complete gene sequences of the mitochondrial encoded 16S rRNA. Molecular Phylogenetics and Evolution 32: 881-891
- Near, T.J., Sandel, M., Kühn, K.L., Unmack, P.J. Wainwright, P.C., & Smith, W.L. 2012. Nuclear gene-inferred phylogenies resolve the relationships of the enigmatic Pygmy Sunfishes, Elassoma (Teleostei: Percomorpha). Molecular Phylogenetics and Evolution 63: 388-395
- Near, T.J. & Cheng, C.-H.C. 2008. Phylogenetics of notothenioid fishes (Teleostei: Acanthomorpha): Inferences from mitochondrial and nuclear gene sequences. Molecular Phylogenetics and Evolution 47: 832-840
- Novo, M., Almodóvar, A., Fernández, R., Giribet, G. & Díaz Cosín, D.J. 2011. Understanding the biogeography of a group of earthworms in the Mediterranean basin—The phylogenetic puzzle of Hormogastridae (Clitellata: Oligochaeta). Molecular Phylogenetics and Evolution 61(1): 125-135
- Nyári, A., Peterson, A.T., Rice, N.H. & Moyle, R.G. 2009. Phylogenetic relationships of flowerpeckers (Aves: Dicaeidae): Novel insights into the evolution of a tropical passerine clade. Molecular Phylogenetics and Evolution 53: 613-619
- O'Hara, T. D., Hugall, A. F., Cisternas, P. A., Boissin, E., Bribiesca-Contreras, G., Sellanes, J., Paulay, G. & Byrne, M. 2018. Phylogenomics, life history and morphological evolution of ophiocomid brittlestars. Molecular Phylogenetics and Evolution 130: 67-80
- Odanaka, K.A., Branstetter, M.G., Tobin, K.B. & Rehan, S.M. 2022. Phylogenomics and historical biogeography of the cleptoparasitic bee genus Nomada (Hymenoptera: Apidae) using ultraconserved elements. Molecular Phylogenetics and Evolution 170(107453): 1-9
- Okanishi, M., O'Hara, T.D. & Fujita, T. 2011. Molecular phylogeny of the order Euryalida (Echinodermata: Ophiuroidea), based on mitochondrial and nuclear ribosomal genes. Molecular Phylogenetics and Evolution 61: 392–399
- Oliver, L.A., Prendini, E., Kraus, F. & Raxworthy, C.J. 2015. Systematics and biogeography of the Hylarana frog (Anura: Ranidae) radiation across tropical Australasia, Southeast Asia, and Africa. Molecular Phylogenetics and Evolution 90: 176–192
- Oliver, P., Hugall, A., Adams, M., Cooper, S.J.B. & Hutchinson, M. 2007. Genetic elucidation of ancient and cryptic diversity in a group of Australian geckos: the Diplodactylus vittatus complex. Molecular Phylogenetics and Evolution 44: 77-88
- Oliver, P.M., Bauer, A.M., Greenbaum, E., Jackman, T. & Hobbie, T. 2012. Molecular phylogenetics of the arboreal Australian gecko genus Oedura Gray 1842 (Gekkota: Diplodactylidae): Another plesiomorphic grade? Molecular Phylogenetics and Evolution 63: 255-264
- Oliver, P.M. & Bauer, A.M. 2011. Systematics and evolution of the Australian knob-tailed geckos (Nephrurus, Carphodactylidae, Gekkota): Plesiomorphic grades and biome shifts through the Miocene. Molecular Phylogenetics and Evolution 59(3): 664-674
- Olson, P.D., Littlewood, D.T.J., Bray, R.A. & Mariaux, J. 2001. Interrelationships and evolution of the tapeworms (Platyhelminthes: Cestoda). Molecular Phylogenetics and Evolution 19: 443-467
- Olsson, U. & Alström, P. 2020. A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae). Molecular Phylogenetics and Evolution 146: Art. 106757
- Orrell, T.M. & Carpenter, K.E. 2004. A phylogeny of the fish family Sparidae (porgies) inferred from mitochondrial sequence data. Molecular Phylogenetics and Evolution 32: 425-434
- Ortiz-Rivas, B. & Martínez-Torres, D. 2010. Combination of molecular data support the existence of three main lineages in the phylogeny of aphids (Hemiptera: Aphididae) and the basal position of the subfamily Lachninae. Molecular Phylogenetics and Evolution 55(1): 305-317
- Oskars, T.R., Bouchet, P. & Malaquias, M.A.E. 2015. A new phylogeny of the Cephalaspidea (Gastropoda: Heterobranchia) based on expanded taxon sampling and gene markers. Molecular Phylogenetics and Evolution 89: 130-150
- Oskars, T.R. & Malaquias, M.A.E. 2019. A molecular phylogeny of the Indo-West Pacific species of Haloa sensu lato gastropods (Cephalaspidea: Haminoeidae): Tethyan vicariance, generic diversity, and ecological specialization. Molecular Phylogenetics and Evolution 139(106557)
- Owen, C.L., Marshall, D.C., Hill, K.B.R. & Simon, C. 2015. The phylogenetic utility of acetyltransferase (ARD1) and glutaminyl tRNA synthetase (QtRNA) for reconstructing Cenozoic relationships as exemplified by the large Australian cicada Pauropsalta complex. Molecular Phylogenetics and Evolution 83: 258-277
- Palm, H.W., Waeschenbach, A. & Littlewood, D.T.J 2009. Molecular phylogeny and evolution of the Trypanorhyncha Diesing, 1863 (Platyhelminths: Cestoda). Molecular Phylogenetics and Evolution 52: 351-367
- Parkin, T., Donnellan, S.C., Parkin, B., Shea, G.M. & Rowley, J.J.L. 2023. Phylogeography, hybrid zones and contemporary species boundaries in the south-eastern Australian smooth frogs (Anura: Myobatrachidae: Geocrinia). Molecular Phylogenetics and Evolution 189: 107934
- Paton, T.A., Baker, A.J., Groth, J.G. & Barrowclough, G.F. 2003. RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds. Molecular Phylogenetics and Evolution 29: 268-278
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